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DNA Labs India

PAX6 Gene Aniridia NGS Genetic Test

DNA Labs India | ISO 9001:2015 Certified

PAX6 Gene Aniridia NGS Genetic Test

Short Name: PAX6 Aniridia NGS

Also known as: PAX6 gene mutation analysis, Aniridia genetic test, PAX6 NGS sequencing

PAX6 Gene Aniridia NGS Genetic Test test available at DNA Labs India for ₹20,000. Uses Next-Generation Sequencing (NGS) on Blood or Extracted DNA or One drop Blood on FTA Card samples. Results in Reports are generally prepared within 3 to 4 weeks of the sample reaching the laboratory. If additional confirmation or family studies are required, the turnaround time may vary.. Free home collection in 300+ cities across India.

Next-Generation SequencingAll Ages🏠 Home Collection

🩺 Medically Reviewed By

Overview

The purpose of the PAX6 Gene Aniridia NGS Genetic Test is to detect pathogenic or likely pathogenic variants in the PAX6 gene and thereby provide a definitive molecular diagnosis for aniridia. By identifying the exact genetic cause, the test enables accurate genetic counselling, recurrence-risk assessment, and early intervention strategies for affected individuals and their at-risk relatives.

Test Code
3766
ICD Code
Q13.1
Price
₹20,000
Sample Type
Blood or Extracted DNA or One drop Blood on FTA Card
Result Time
Reports are generally prepared within 3 to 4 weeks of the sample reaching the laboratory. If additional confirmation or family studies are required, the turnaround time may vary.
Fasting Required
No
Method
Next-Generation Sequencing (NGS)
Step 1

Sample Collection

No fasting or special preparation is required. Please carry your clinical records, previous eye examination reports, and any relevant family history information to the collection centre.

Method: Peripheral venipuncture or FTA card blood spot

Step 2

Laboratory Analysis

A peripheral blood sample will be collected in an EDTA vacutainer by a trained phlebotomist. For home collection, an FTA card blood-spot method may be used.

Step 3

Report Delivery

No restrictions are needed after sample collection. The sample should be transported to the laboratory as per the instructions provided at the time of collection.

Timeline: Reports are generally prepared within 3 to 4 weeks of the sample reaching the laboratory. If additional confirmation or family studies are required, the turnaround time may vary.

Patient Instructions

1
Before the Test:Please review the purpose, limitations, and possible outcomes of this genetic test with your doctor. A genetic counselling session is included to collect a three-generation family history and draw a pedigree chart.
2
During the Test:The sample collection takes about 5–10 minutes. The genetic test itself is performed in the laboratory using NGS technology over several days.
3
After the Test:You will receive a comprehensive clinical report with variant classification, an interpretation from the clinical genetics team, and raw data files if requested. A post-test counselling session is recommended to understand the result and its family implications.

About This Test

Who Should Get This Test

The purpose of the PAX6 Gene Aniridia NGS Genetic Test is to detect pathogenic or likely pathogenic variants in the PAX6 gene and thereby provide a definitive molecular diagnosis for aniridia. By identifying the exact genetic cause, the test enables accurate genetic counselling, recurrence-risk assessment, and early intervention strategies for affected individuals and their at-risk relatives.

How to Prepare

  • Please carry a valid photo ID for patient identification
  • Write the patient's name and date of birth on the sample label
  • Inform the lab if the patient has received a blood transfusion in the last 48 hours
  • For an FTA card, allow the blood spot to dry completely before placing it in the provided envelope

Doctor's Notes

Reviewed by — MBBS, MD (Medical Genetics) · Reg. No. 8532

"Early molecular confirmation of PAX6 variants in aniridia families is critical for informed family planning, recurrence-risk counselling, and early surveillance for associated eye complications."

Last medically reviewed: September 7, 2026

Test Parameters & Specifications

Sample TypeBlood or Extracted DNA or One drop Blood on FTA Card
Sample Volume2 mL whole blood in EDTA; 2-5 µL FTA card spot; 1-2 µg extracted DNA
ContainerEDTA vacutainer / FTA card / sterile tube
Collection MethodPeripheral venipuncture or FTA card blood spot

Sample Stability

Whole blood in EDTA vacutainer72 hours
Dried blood spot on FTA cardSeveral weeks
Extracted DNA6 months
Sample Rejection Criteria:
  • Clotted blood sample
  • Insufficient sample volume or quantity
  • Unlabelled or mislabelled sample
  • Suspected sample mix-up
  • Sample received in a heparin tube instead of EDTA
  • Leaked or damaged sample container

Understanding Your Results

Interpretation of the PAX6 gene NGS test should always be performed by a clinical geneticist in the context of the ophthalmological examination and family history. The report classifies variants according to current ACMG/AMP guidelines.
📊

Pathogenic variant detected

Confirms the molecular diagnosis of PAX6-related aniridia and establishes the genetic basis for the clinical features.

Action: Refer to clinical genetics and ophthalmology for surveillance and family counselling.

📊

Likely pathogenic variant detected

Supports the molecular diagnosis; additional segregation or functional evidence may strengthen classification.

Action: Offer targeted testing to at-risk family members and discuss reproductive options.

📊

Variant of uncertain significance (VUS)

The variant cannot yet be used for diagnosis or carrier status. Further laboratory and family studies may be required.

Action: Discuss in detail with a clinical geneticist; consider complementary genetic or biochemical testing.

📊

No pathogenic variant detected

Does not exclude PAX6-related disease due to large deletions, deep intronic variants, or other genetic causes.

Action: Correlate with clinical findings; consider PAX6 deletion/duplication testing or a broader ophthalmic genetics panel.

⚠️ When to Consult a Doctor:

Consult your referring doctor or a clinical geneticist when a pathogenic, likely pathogenic, or uncertain variant is reported. If the result is negative, continue ophthalmological follow-up as advised by your eye specialist, especially when clinical features strongly suggest aniridia.

Limitations

  • NGS does not reliably detect large PAX6 deletions, duplications, or complex rearrangements
  • Variants in regions with low sequencing depth may be missed
  • Deep intronic or regulatory variants are not routinely captured by this test
  • A lack of family history does not exclude a de novo PAX6 variant
  • The test is not intended for somatic variant testing

Risks & Considerations

  • Minimal risk of discomfort at the venipuncture site
  • Small chance of bruising or bleeding
  • Rare possibility of feeling faint during blood collection
  • Emotional or psychological impact of a genetic test result

Interfering Factors

  • Degraded or fragmented DNA from improper sample transport
  • Low DNA yield or insufficient sample quantity
  • Contamination with DNA from another individual
  • Unlabelled or mislabelled sample

Compare With Similar Tests

TestPAX6 Gene Aniridia NGS Genetic TestPAX6 Gene Aniridia NGS TestPAX6 Deletion/Duplication AnalysisAnterior Segment Dysgenesis NGS PanelWhole Exome Sequencing (WES)
ComparisonPAX6 Gene Aniridia NGS Genetic Test

Frequently Asked Questions

What is the cost of PAX6 Gene Aniridia NGS Genetic Test?
The test cost at DNA Labs India is Rs 20000.0. It includes genetic counselling, a detailed clinical report, and raw data files such as FASTQ and VCF.
What does the PAX6 gene do?
PAX6 is a critical regulatory gene for eye development. Pathogenic variants in PAX6 are the most common cause of aniridia and can also cause other anterior segment eye abnormalities.
What is aniridia?
Aniridia is a rare genetic eye disorder in which the iris is partially or completely missing. It can cause poor vision, nystagmus, glaucoma, cataracts, foveal hypoplasia, and optic nerve hypoplasia.
Who should take this PAX6 NGS genetic test?
It is recommended for individuals with clinical features of aniridia, unexplained congenital eye abnormalities, family history of PAX6-related disease, or for individuals who need genetic counselling for reproductive planning.
What type of sample is needed for this test?
The test can be performed on blood, extracted DNA, or one drop of blood applied on an FTA card. Whole blood is typically collected in an EDTA vacutainer.
Is fasting required before giving the sample?
No, fasting is not required for the PAX6 gene NGS genetic test. The sample can be collected at any time of the day.
How long does the PAX6 gene test report take?
The report is generally available in 3 to 4 weeks after the sample reaches the DNA Labs India laboratory.
Will I receive raw data files with my report?
Yes, DNA Labs India is transparent about genetic data and will provide raw data files, including FASTQ and VCF, along with the conclusive clinical report.
Does the test price include genetic counselling?
Yes, the price includes a genetic counselling session to collect family history, draw a pedigree chart, and explain the implications of the test result.
Is home sample collection available for the PAX6 gene test?
Yes, free home sample collection is available for online bookings in many cities across India, including Delhi, Mumbai, Bangalore, Hyderabad, Chennai, Kolkata, Pune, and Ahmedabad.
Can a normal eye examination exclude the need for a genetic test?
No. An eye examination identifies clinical features but cannot determine the exact molecular cause. Genetic testing is required to confirm a PAX6 mutation and provide accurate recurrence-risk counselling.
What should I do if the result shows a pathogenic PAX6 variant?
You should consult a clinical geneticist and an ophthalmologist for regular eye surveillance, family member testing, and discussion of reproductive options. The genetic counselling session can guide you through the next steps.
Worried about the process? Our certified phlebotomists collect thousands of samples every month across India. The process takes under 5 minutes and is virtually painless. Questions? Message us on WhatsApp — we're here 7 days a week.

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Your medical data is protected under Indian law.

Stored in India: All patient records are stored on servers located in India. No data is transferred outside the country.

DPDP Act Compliant: Under the Digital Personal Data Protection Act 2023, you can request deletion of your records at any time by contacting support.

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