Diploid Plant Genome De Novo Assembly and Annotation-Illumina Test
Short Name: Plant Genome Assembly
Also known as: Plant Genome De Novo Sequencing, Illumina Plant Genome Assembly
Diploid Plant Genome De Novo Assembly and Annotation-Illumina Test test available at DNA Labs India for ₹250,000. Uses Illumina sequencing, De novo assembly, Genome annotation on Extracted DNA samples. Results in Reports are delivered within 8 weeks from sample receipt.. Free home collection in 300+ cities across India.
🩺 Medically Reviewed By
Dr Pasupathy Arumugam
Consultant Pathologist · Reg: 21521
Last reviewed: September 7, 2026
Overview
The purpose of this test is to generate a high-quality de novo genome assembly and annotation for diploid plant species. This is essential for understanding the genetic basis of traits, identifying genes responsible for important agronomic characteristics, and facilitating marker-assisted breeding. The assembly provides a reference genome for further studies, including transcriptomics, epigenomics, and evolutionary analysis.
- Test Code
- 6392
- CPT Code
- 81479
- ICD Code
- Z01.89
- Price
- ₹250,000
- Sample Type
- Extracted DNA
- Result Time
- Reports are delivered within 8 weeks from sample receipt.
- Fasting Required
- No
- Method
- Illumina sequencing, De novo assembly, Genome annotation
Sample Collection
Ensure extracted DNA is of high quality (OD 260/280: 1.8-2.0) and quantity (≥ 2 µg). Ship on dry ice to maintain integrity.
Method: Extracted DNA shipment (dry ice)
Laboratory Analysis
No special requirements as sample is extracted DNA.
Report Delivery
Store DNA at -20°C or below until shipment. Avoid repeated freeze-thaw cycles.
Timeline: Reports are delivered within 8 weeks from sample receipt.
Patient Instructions
About This Test
Who Should Get This Test
The purpose of this test is to generate a high-quality de novo genome assembly and annotation for diploid plant species. This is essential for understanding the genetic basis of traits, identifying genes responsible for important agronomic characteristics, and facilitating marker-assisted breeding. The assembly provides a reference genome for further studies, including transcriptomics, epigenomics, and evolutionary analysis.
How to Prepare
- Use sterile DNA LoBind tubes
- Label tube with sample ID and date
- Ship on dry ice to DNA Labs India
- Include a completed requisition form
Doctor's Notes
Reviewed by Dr Pasupathy Arumugam — MBBS, MD (Pathology) · Reg. No. 21521
"De novo assembly of plant genomes is crucial for understanding genetic diversity and trait mapping. Illumina-based assembly offers a cost-effective approach for diploid species, enabling accurate gene annotation and structural variant detection."
Last medically reviewed: September 7, 2026
Test Parameters & Specifications
Sample Stability
- Degraded DNA (fragments < 10 kb)
- Insufficient quantity (< 1 µg)
- Contaminated with RNA or proteins
- Incorrect labeling or missing requisition form
Understanding Your Results
This test is primarily for research purposes. Consult with a geneticist or bioinformatician for interpretation and further experimental design.
Limitations
- ⚠Illumina short reads may not resolve complex repeats or large structural variants
- ⚠Assembly may be fragmented in highly repetitive regions
- ⚠Annotation accuracy depends on availability of related reference genomes
- ⚠Not suitable for polyploid or highly heterozygous genomes without additional technologies
Risks & Considerations
- ●No physical risks as sample is extracted DNA
- ●Potential for incomplete assembly due to genome complexity
Interfering Factors
- ●DNA degradation or contamination
- ●Insufficient DNA quantity or quality
- ●High heterozygosity or polyploidy (not suitable for diploid assembly)
- ●Presence of highly repetitive sequences
- ●Incorrect sample labeling
Compare With Similar Tests
| Test | Diploid Plant Genome De Novo Assembly and Annotation-Illumina | |||
|---|---|---|---|---|
| Comparison | Diploid Plant Genome De Novo Assembly and Annotation-Illumina |
Frequently Asked Questions
What is the cost of the Diploid Plant Genome De Novo Assembly and Annotation-Illumina test?
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What is the difference between de novo assembly and resequencing?
Can this test be used for polyploid plants?
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