Diploid Plant Genome Reference Based Data Analysis-Illumina Test
Short Name: Diploid Plant Genome Analysis
Also known as: Plant Genome Sequencing Analysis, Illumina Plant DNA Analysis
Diploid Plant Genome Reference Based Data Analysis-Illumina Test test available at DNA Labs India for ₹50,000. Uses Illumina Sequencing, Reference-based alignment, Variant calling on Extracted DNA samples. Results in Reports are delivered within 4 weeks from sample receipt.. Free home collection in 300+ cities across India.
🩺 Medically Reviewed By
Dr Pasupathy Arumugam
Consultant Pathologist · Reg: 21521
Last reviewed: September 7, 2026
Overview
The primary purpose of this analysis is to detect genetic mutations, insertions, deletions, and other variations in the plant genome that may be associated with poor growth, disease susceptibility, or reduced yield. It also helps in confirming the genetic identity of plant varieties, assessing genetic diversity, and facilitating marker-assisted selection. This information is vital for plant breeders, researchers, and agricultural companies aiming to develop improved crop varieties.
- Test Code
- 6389
- CPT Code
- Not applicable
- ICD Code
- Not applicable
- Price
- ₹50,000
- Sample Type
- Extracted DNA
- Result Time
- Reports are delivered within 4 weeks from sample receipt.
- Fasting Required
- No
- Method
- Illumina Sequencing, Reference-based alignment, Variant calling
Sample Collection
Ensure the plant tissue sample is fresh and free from contaminants. If sending extracted DNA, it should be stored at -20°C and shipped on dry ice.
Method: Home collection or drop-off
Laboratory Analysis
Collect tissue samples in sterile containers. For extracted DNA, use a sterile microcentrifuge tube and label clearly.
Report Delivery
Samples should be transported to the lab within 24 hours. If delayed, store at -20°C for DNA or 4°C for tissue.
Timeline: Reports are delivered within 4 weeks from sample receipt.
Patient Instructions
About This Test
Who Should Get This Test
The primary purpose of this analysis is to detect genetic mutations, insertions, deletions, and other variations in the plant genome that may be associated with poor growth, disease susceptibility, or reduced yield. It also helps in confirming the genetic identity of plant varieties, assessing genetic diversity, and facilitating marker-assisted selection. This information is vital for plant breeders, researchers, and agricultural companies aiming to develop improved crop varieties.
How to Prepare
- Use young, healthy leaf tissue for best DNA yield
- Avoid damaged or diseased tissue
- Collect at least 100 mg of fresh tissue
- For extracted DNA, provide 1-2 µg at concentration ≥ 50 ng/µl
- Ship samples in a sealed, labeled tube with ice pack
Doctor's Notes
Reviewed by Dr Pasupathy Arumugam — MBBS, MD (Pathology) · Reg. No. 21521
"This analysis is crucial for identifying genetic variants that affect plant health and yield. Early detection can guide breeding and intervention strategies."
Last medically reviewed: September 7, 2026
Test Parameters & Specifications
Sample Stability
- Insufficient DNA quantity (< 500 ng)
- DNA degradation (smear on gel)
- Contaminated samples (e.g., fungal growth)
- Improper labeling or packaging
Understanding Your Results
Single nucleotide polymorphism; may be associated with traits or diseases
Action: Further functional analysis recommended if in coding region
Insertion or deletion; may cause frameshift mutations
Action: Assess impact on protein function
Large genomic rearrangement; may affect gene expression
Action: Validate with additional methods if clinically relevant
If you are a researcher or breeder, consult with a geneticist or bioinformatician to interpret the results in the context of your plant species and breeding goals. For agricultural applications, discuss with an agronomist.
Limitations
- ⚠Reference-based analysis may miss novel sequences not present in the reference genome
- ⚠Cannot detect epigenetic modifications
- ⚠Large structural variants may be underestimated
- ⚠Results are dependent on the quality of the reference genome
Risks & Considerations
- ●No physical risks as this is a laboratory test
- ●Potential for inconclusive results due to sample quality
- ●Interpretation may require expert consultation
Interfering Factors
- ●Degraded or fragmented DNA
- ●Contamination with non-plant DNA
- ●Insufficient DNA quantity
- ●Poor reference genome quality for the species
Compare With Similar Tests
| Test | Diploid Plant Genome Reference Based Data Analysis-Illumina | Plant Whole Genome Sequencing (De Novo) | Plant Genotyping by Sequencing (GBS) | Plant Transcriptome Analysis (RNA-Seq) |
|---|---|---|---|---|
| Comparison | Diploid Plant Genome Reference Based Data Analysis-Illumina |
Frequently Asked Questions
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