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DNA Labs India

KCNT1 Gene Epilepsy, nocturnal frontal lobe NGS Genetic Test

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KCNT1 Gene Epilepsy, nocturnal frontal lobe NGS Genetic Test

Short Name: KCNT1 NGS Test

Also known as: KCNT1-related epilepsy NGS test, Nocturnal Frontal Lobe Epilepsy Genetic Test, KCNT1 gene mutation analysis

KCNT1 Gene Epilepsy, nocturnal frontal lobe NGS Genetic Test test available at DNA Labs India for ₹20,000. Uses Next-Generation Sequencing (NGS) on Blood or Extracted DNA or One drop Blood on FTA Card samples. Results in Results are typically available within 3 to 4 weeks from sample receipt.. Free home collection in 300+ cities across India.

NGS Genetic Test🏠 Home Collection

🩺 Medically Reviewed By

Overview

The purpose of this NGS genetic test is to identify disease-causing variants in the KCNT1 gene in individuals with a clinical suspicion of nocturnal frontal lobe epilepsy or related epileptic syndromes. The results help confirm the diagnosis, guide therapeutic decisions, and provide recurrence risk information for family planning.

Test Code
4082
Price
₹20,000
Sample Type
Blood or Extracted DNA or One drop Blood on FTA Card
Result Time
Results are typically available within 3 to 4 weeks from sample receipt.
Fasting Required
No
Method
Next-Generation Sequencing (NGS)
Step 1

Sample Collection

No special preparation is required. A valid physician referral and clinical history are essential. Genetic counseling is recommended before testing to understand the implications.

Method: Venous blood collection / FTA card blood spot

Step 2

Laboratory Analysis

Blood is collected by a trained phlebotomist using sterile technique. For FTA card, a few drops of blood are placed on the card and allowed to air dry.

Step 3

Report Delivery

No specific precautions are needed after sample collection.

Timeline: Results are typically available within 3 to 4 weeks from sample receipt.

Patient Instructions

1
Before the Test:No special preparation required. You may eat and drink normally.
2
During the Test:Sample collection takes only a few minutes. You may feel a slight pinch during blood draw.
3
After the Test:You may resume normal activities immediately.

About This Test

Who Should Get This Test

The purpose of this NGS genetic test is to identify disease-causing variants in the KCNT1 gene in individuals with a clinical suspicion of nocturnal frontal lobe epilepsy or related epileptic syndromes. The results help confirm the diagnosis, guide therapeutic decisions, and provide recurrence risk information for family planning.

How to Prepare

  • For blood, collect in EDTA vacutainer and mix gently.
  • For FTA card, label with patient ID and allow to air dry.
  • Do not expose FTA card to moisture or heat.

Doctor's Notes

Reviewed by — MBBS, MD (Medical Genetics) · Reg. No. 8532

"For families with KCNT1-related epilepsy, genetic testing is crucial for accurate diagnosis, recurrence risk counseling, and informed family planning."

Last medically reviewed: September 7, 2026

Test Parameters & Specifications

Sample TypeBlood or Extracted DNA or One drop Blood on FTA Card
Sample Volume2-3 mL blood / 5-10 ng DNA / 1 FTA spot
ContainerEDTA vacutainer / sterile tube / FTA card
Collection MethodVenous blood collection / FTA card blood spot

Sample Stability

Whole blood (EDTA): 24 hours at room temperature; 72 hours at 2-8°C
Extracted DNA: 2-8°C for 2 weeks; -20°C for long-term storage
FTA card: Stable at room temperature for up to 6 months
Sample Rejection Criteria:
  • Hemolyzed or clotted blood
  • Insufficient sample volume
  • Mislabeled sample
  • Sample received after prolonged transit time (>72 hours unfrozen)

Understanding Your Results

The KCNT1 gene encodes a component of the sodium-activated potassium channel. Pathogenic variants in KCNT1 are associated with autosomal dominant epileptic conditions, including nocturnal frontal lobe epilepsy (ADNFLE) and epileptic encephalopathies. The presence of a pathogenic variant confirms a genetic etiology and helps guide treatment and counseling.
📊

Pathogenic

📊

Likely Pathogenic

📊

VUS

📊

Benign

⚠️ When to Consult a Doctor:

Consult your neurologist or geneticist if you or your child experience seizures, especially nocturnal seizures, sudden awakening episodes, or unusual motor behaviors during sleep. If this test result is positive, a genetic consultation is recommended to review the implications and management options.

Limitations

  • This test only analyzes the KCNT1 gene, not other epilepsy-related genes.
  • The test may not detect large deletions/duplications or deep intronic variants depending on the NGS protocol.
  • Variants of uncertain significance (VUS) may be reported; further testing may be required.
  • A negative result does not exclude a genetic cause for epilepsy.
  • Predictive testing in asymptomatic individuals requires pre-test genetic counseling.

Risks & Considerations

  • No significant physical risks
  • Possible bruising at the injection site
  • Emotional or psychological impact of genetic results

Interfering Factors

  • Sample contamination with external DNA
  • Low DNA quality or quantity
  • Incomplete coverage of repetitive regions
  • Maternal cell contamination in prenatal samples

Frequently Asked Questions

What is KCNT1 gene epilepsy?
KCNT1 gene epilepsy is a rare genetic form of epilepsy caused by mutations in the KCNT1 potassium channel gene. It often presents as nocturnal frontal lobe epilepsy with seizures during sleep.
What are the common symptoms?
Symptoms include brief nocturnal seizures, sudden awakening, dystonic posturing, abnormal behavior during sleep, difficulty speaking, and memory problems.
How is KCNT1 gene epilepsy diagnosed?
Diagnosis involves clinical evaluation, EEG, MRI, and genetic testing using NGS to detect mutations in the KCNT1 gene.
What is the cost of the KCNT1 NGS genetic test in India?
The test costs Rs 20,000 (INR 20000) at DNA Labs India, which includes free home sample collection in major cities.
What type of sample is required?
A blood sample, extracted DNA, or one drop of blood on an FTA card is required for the test.
Is fasting required before the test?
No, fasting is not required. The sample can be collected at any time during the day.
How long does it take to get the report?
Reports are usually delivered within 3 to 4 weeks after the sample is received.
What does NGS mean?
NGS (Next-Generation Sequencing) is a high-throughput technology that reads multiple DNA sequences simultaneously, allowing comprehensive analysis of the KCNT1 gene.
Will my insurance cover the cost?
Coverage varies by insurance provider and policy. Government schemes like PMJAY, CGHS, ECHS, and ESIC generally do not cover this outpatient genetic test.
Is home collection available?
Yes, free home sample collection is available for online bookings in over 100 cities across India.
Why is it important to get raw data, FASTQ, and VCF files?
These files allow independent bioinformatics analysis and future re-interpretation of variants, ensuring transparency and validation of the clinical report.
Can this test be done for prenatal screening?
Yes, with appropriate genetic counseling and using appropriate samples (e.g., amniotic fluid), but this requires specialized arrangements.
Worried about the process? Our certified phlebotomists collect thousands of samples every month across India. The process takes under 5 minutes and is virtually painless. Questions? Message us on WhatsApp — we're here 7 days a week.

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Your medical data is protected under Indian law.

Stored in India: All patient records are stored on servers located in India. No data is transferred outside the country.

DPDP Act Compliant: Under the Digital Personal Data Protection Act 2023, you can request deletion of your records at any time by contacting support.

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