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MECP2 Gene Encephalopathy neonatal severe NGS Genetic Test

DNA Labs India | ISO 9001:2015 Certified

MECP2 Gene Encephalopathy neonatal severe NGS Genetic Test

Short Name: MECP2 NGS Test

Also known as: MECP2 Gene Sequencing, MECP2 Mutation Analysis, NGS for MECP2 Gene, MECP2 Encephalopathy Genetic Test

MECP2 Gene Encephalopathy neonatal severe NGS Genetic Test test available at DNA Labs India for ₹20,000. Uses Next-Generation Sequencing (NGS) on Blood or Extracted DNA or One drop Blood on FTA Card samples. Results in Reports are delivered within 3 to 4 weeks after the sample reaches the laboratory.. Free home collection in 300+ cities across India.

NGS Genetic TestNeonate🏠 Home Collection

🩺 Medically Reviewed By

Overview

The purpose of this NGS genetic test is to identify disease-causing mutations in the MECP2 gene, aid in the confirmed diagnosis of neonatal severe encephalopathy, and guide clinical management and genetic counseling.

Test Code
4057
Price
₹20,000
Sample Type
Blood or Extracted DNA or One drop Blood on FTA Card
Result Time
Reports are delivered within 3 to 4 weeks after the sample reaches the laboratory.
Fasting Required
No
Method
Next-Generation Sequencing (NGS)
Step 1

Sample Collection

No special preparation or fasting is required. Please share any relevant clinical history and prior genetic test reports with the laboratory.

Method: Venipuncture or heel-prick spot on FTA card

Step 2

Laboratory Analysis

A trained phlebotomist will collect a venous blood sample. For infants, a heel-prick capillary sample can be spotted on an FTA card.

Step 3

Report Delivery

No specific aftercare is required. You may resume normal activities immediately.

Timeline: Reports are delivered within 3 to 4 weeks after the sample reaches the laboratory.

Patient Instructions

1
Before the Test:A pretest genetic counselling session is recommended. A pedigree chart will be drawn to assess the inheritance pattern and other affected family members.
2
During the Test:The NGS analysis is performed on the extracted DNA. The MECP2 gene is specifically enriched and sequenced. Variants are confirmed by Sanger sequencing.
3
After the Test:A post-test genetic counseling session will be scheduled to explain the results, implications, and available management options.

About This Test

Who Should Get This Test

The purpose of this NGS genetic test is to identify disease-causing mutations in the MECP2 gene, aid in the confirmed diagnosis of neonatal severe encephalopathy, and guide clinical management and genetic counseling.

How to Prepare

  • Consent form and requisition form with clinical history must be filled
  • Collect blood in an EDTA vacutainer or prepare dried blood spot on FTA card
  • Label the sample with patient’s name, unique ID, and date/time of collection
  • Transport sample to DNA Labs India laboratory within 24 hours at room temperature or under refrigeration as per kit instructions

Doctor's Notes

Reviewed by — MBBS, MD (Medical Genetics) · Reg. No. 8532

"Early genetic confirmation of MECP2-related encephalopathy enables families to receive appropriate counseling and tailor medical management for the child."

Last medically reviewed: September 7, 2026

Test Parameters & Specifications

Sample TypeBlood or Extracted DNA or One drop Blood on FTA Card
Sample Volume5 mL whole blood or 1 drop (FTA card)
ContainerEDTA vacutainer or FTA card
Collection MethodVenipuncture or heel-prick spot on FTA card

Sample Stability

Whole blood (EDTA) at 15-25°C
Whole blood (EDTA) at 2-8°C
Extracted DNA at -20°C
Dried blood spot (FTA card) at room temperature
Sample Rejection Criteria:
  • Clotted or hemolyzed blood sample
  • Insufficient quantity of blood
  • Mislabeled or unlabeled specimens
  • Sample received in a tube other than EDTA (e.g., heparin)
  • Degraded DNA not suitable for NGS analysis

Understanding Your Results

This test identifies genomic variations in the MECP2 gene. The interpretation is based on current published guidelines and each classification follows ACMG/AMP standards.
📊

No pathogenic mutation detected

📊

Pathogenic variant detected

📊

Variant of uncertain significance (VUS) detected

📊

Benign or likely benign variant detected

⚠️ When to Consult a Doctor:

Consult a pediatric neurologist or clinical geneticist immediately if your newborn exhibits severe developmental delay, refractory seizures, abnormal breathing patterns, or poor tone, especially if MECP2-related encephalopathy is suspected.

Limitations

  • Targeted NGS may fail to detect deep intronic, regulatory, or large structural variants
  • Partial gene deletion/duplication may not be identified unless copy number variant (CNV) analysis is added
  • Variant of uncertain significance (VUS) may require additional familial testing and interpretation
  • Negative result does not completely exclude MECP2-related disorder if another genetic cause is responsible

Risks & Considerations

  • Mild bruising or discomfort at the blood collection site
  • Rare risk of infection (very low)
  • No significant long-term risks are associated with blood sampling

Interfering Factors

  • Blood samples collected in improper anticoagulant (e.g., heparin) may interfere with DNA amplification
  • Degraded or fragmented DNA from prolonged storage or transport at ambient temperatures
  • Presence of maternal cell contamination in neonatal blood samples may affect variant detection
  • Prior bone marrow transplantation may result in mixed DNA profiles

Compare With Similar Tests

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Frequently Asked Questions

What is the MECP2 Gene Encephalopathy Neonatal Severe NGS Genetic Test?
It is a Next-Generation Sequencing test that analyzes the MECP2 gene to detect mutations associated with neonatal severe encephalopathy, a rare neurological disorder.
What is the cost of this test?
The test costs INR 20,000 in India. The price may vary slightly by location and laboratory, but DNA Labs India offers it at this flat rate with free home sample collection.
What sample is required?
The sample can be 5 mL whole blood in an EDTA tube, extracted DNA, or one drop of blood spotted on an FTA card.
Do I need to fast before the test?
No, fasting is not required for this genetic test. You can take blood at any time of the day.
How long does it take to get results?
Reports are typically delivered within 3 to 4 weeks after the sample is received by the laboratory.
What conditions does this test detect?
This test detects mutations in the MECP2 gene that cause neonatal severe encephalopathy, characterized by severe developmental delay, seizures, breathing difficulties, and abnormal muscle tone.
How is the test performed?
DNA is extracted from the blood or FTA card sample, then the MECP2 gene is enriched and sequenced using NGS technology. Any detected variants are confirmed by Sanger sequencing.
Is home sample collection available?
Yes, DNA Labs India offers free home sample collection for online bookings in over 200 cities across India.
Does the test include genetic counseling?
Yes, a genetic counseling session is included. During pre-test counseling, a pedigree chart is drawn to assess family history and inheritance pattern.
What do negative results mean?
A negative result means no pathogenic mutation was found in the MECP2 gene. It does not entirely rule out MECP2-related disorders because other genetic or non-genetic causes may be responsible.
Can this test detect all MECP2 mutations?
NGS detects point mutations and small indels in coding and splice-site regions. Large deletions or duplications may not be detected unless separate CNV analysis is performed.
Is this test covered by insurance or government schemes?
Coverage depends on the specific insurance policy or scheme. Currently, this test is not routinely covered under PMJAY, CGHS, ECHS, or ESIC; however, private insurance may provide partial or full coverage depending on the policy.
Worried about the process? Our certified phlebotomists collect thousands of samples every month across India. The process takes under 5 minutes and is virtually painless. Questions? Message us on WhatsApp — we're here 7 days a week.

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For Hospitals & Clinics

Reference Laboratory Services

We serve as a reference laboratory for hospitals and clinics across India. Send samples from your facility with same-day pickup, priority processing, and results delivered through our online portal. Competitive institutional pricing available.

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Your Data Privacy

Your medical data is protected under Indian law.

Stored in India: All patient records are stored on servers located in India. No data is transferred outside the country.

DPDP Act Compliant: Under the Digital Personal Data Protection Act 2023, you can request deletion of your records at any time by contacting support.

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