Polyploid Plant Genome De Novo Assembly and Annotation-Illumina Test
Short Name: Polyploid Plant Genome Assembly
Also known as: De Novo Plant Genome Assembly, Illumina Plant Genome Sequencing
Polyploid Plant Genome De Novo Assembly and Annotation-Illumina Test test available at DNA Labs India for ₹560,000. Uses Illumina short-read sequencing, De novo assembly, Genome annotation on Extracted DNA samples. Results in Reports are delivered within 8 weeks from the date of sample receipt.. Free home collection in 300+ cities across India.
🩺 Medically Reviewed By
Dr Pasupathy Arumugam
Consultant Pathologist · Reg: 21521
Last reviewed: September 7, 2026
Overview
The primary purpose of this test is to generate a high-quality reference genome for polyploid plant species, enabling detailed genetic and genomic studies. It facilitates the identification of genes responsible for agronomically important traits, supports marker-assisted breeding, and aids in understanding genome evolution. The annotated genome serves as a foundation for functional genomics, comparative genomics, and genetic improvement programs.
- Test Code
- 6393
- CPT Code
- Not applicable
- ICD Code
- Not applicable
- Price
- ₹560,000
- Sample Type
- Extracted DNA
- Result Time
- Reports are delivered within 8 weeks from the date of sample receipt.
- Fasting Required
- No
- Method
- Illumina short-read sequencing, De novo assembly, Genome annotation
Sample Collection
Ensure DNA is extracted using a high-quality method (e.g., CTAB or commercial kit) and quantified using Qubit or similar. DNA should be free of RNA and protein contamination. Ship on dry ice to maintain integrity.
Method: Extracted DNA shipment (dry ice)
Laboratory Analysis
No special requirements during collection as sample is extracted DNA.
Report Delivery
Store DNA at -80°C until shipment. Provide detailed sample information including species, tissue source, and any relevant metadata.
Timeline: Reports are delivered within 8 weeks from the date of sample receipt.
Patient Instructions
About This Test
Who Should Get This Test
The primary purpose of this test is to generate a high-quality reference genome for polyploid plant species, enabling detailed genetic and genomic studies. It facilitates the identification of genes responsible for agronomically important traits, supports marker-assisted breeding, and aids in understanding genome evolution. The annotated genome serves as a foundation for functional genomics, comparative genomics, and genetic improvement programs.
How to Prepare
- Use sterile, DNA-free tubes
- Label each tube with sample ID and date
- Include a completed requisition form
- Ship on dry ice to DNA Labs India facility
Doctor's Notes
Reviewed by Dr Pasupathy Arumugam — MBBS, MD (Pathology) · Reg. No. 21521
"Polyploid genomes require specialized assembly algorithms to resolve homologous sequences. Our Illumina-based pipeline ensures high-confidence contigs and accurate gene annotation."
Last medically reviewed: September 7, 2026
Test Parameters & Specifications
Sample Stability
- Degraded DNA (fragment size < 20 kb)
- Insufficient quantity (< 1 µg)
- Contaminated with RNA or proteins
- Improper labeling or documentation
Understanding Your Results
Indicates a highly complete assembly covering most conserved genes
May indicate fragmented assembly due to repetitive regions or insufficient coverage
Suggests a complex genome with many functional elements
May require additional RNA-seq data for improved gene prediction
This test is for research purposes and not for clinical diagnosis. Consult a geneticist or bioinformatician for interpretation of results and further research planning.
Limitations
- ⚠Short-read assembly may not fully resolve highly repetitive regions
- ⚠Phasing of homeologous chromosomes may be incomplete
- ⚠Annotation accuracy depends on availability of transcriptomic evidence
- ⚠Large genomes may require additional sequencing for optimal coverage
Risks & Considerations
- ●No physical risks as this is a laboratory test on extracted DNA
- ●Potential for incomplete assembly due to genome complexity
- ●Data interpretation may require specialized expertise
Interfering Factors
- ●DNA degradation or low molecular weight DNA
- ●Contamination with host or bacterial DNA
- ●Insufficient sequencing depth
- ●High heterozygosity or repetitive content
- ●Presence of multiple subgenomes with high similarity
Compare With Similar Tests
| Test | Polyploid Plant Genome De Novo Assembly and Annotation-Illumina | Whole Genome Sequencing (WGS) - Human | Plant Genome Resequencing | RNA Sequencing (Transcriptome) |
|---|---|---|---|---|
| Comparison | Polyploid Plant Genome De Novo Assembly and Annotation-Illumina |
Frequently Asked Questions
What is polyploid plant genome de novo assembly?
Why is Illumina sequencing used for this test?
What sample is required?
How long does the test take?
What is included in the cost?
Can you handle any polyploid plant species?
What quality metrics will be reported?
Is home sample collection available?
How should the DNA sample be shipped?
Will the data be kept confidential?
Can this service be used for clinical diagnosis?
What if the assembly quality is poor?
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