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POMT1 Gene Limb-girdle muscular dystrophy, autosomal recessive type 2K NGS Genetic Test

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POMT1 Gene Limb-girdle muscular dystrophy, autosomal recessive type 2K NGS Genetic Test

Short Name: POMT1 LGMD2K NGS Genetic Test

Also known as: LGMD2K genetic test, POMT1 gene mutation analysis, POMT1 NGS sequencing, Autosomal recessive limb-girdle muscular dystrophy type 2K DNA test

POMT1 Gene Limb-girdle muscular dystrophy, autosomal recessive type 2K NGS Genetic Test test available at DNA Labs India for ₹20,000. Uses Next-Generation Sequencing (NGS) on Blood or Extracted DNA or One drop Blood on FTA Card samples. Results in 3 to 4 weeks from sample receipt. Complex cases with variants requiring family segregation studies may take longer.. Free home collection in 300+ cities across India.

NGS Genetic Test🏠 Home Collection

🩺 Medically Reviewed By

Overview

The purpose of this NGS genetic test is to identify disease-causing variants in the POMT1 gene, confirm a diagnosis of autosomal recessive limb-girdle muscular dystrophy type 2K, and support medical management and reproductive decision-making. The test is intended for use in individuals with clinical features suggestive of LGMD2K, a family history of the condition, or after abnormal creatine kinase levels and muscle weakness have been noted.

Test Code
4207
Price
₹20,000
Sample Type
Blood or Extracted DNA or One drop Blood on FTA Card
Result Time
3 to 4 weeks from sample receipt. Complex cases with variants requiring family segregation studies may take longer.
Fasting Required
No
Method
Next-Generation Sequencing (NGS)
Step 1

Sample Collection

No fasting is required. The patient should carry a valid ID, previous clinical notes, muscle biopsy reports, and creatine kinase results if available. Genetic counselling is strongly recommended before the test. An informed consent for genetic testing must be signed.

Method: Peripheral venipuncture or blood spot on FTA card

Step 2

Laboratory Analysis

Sample collection takes around 5 to 10 minutes. If blood is being drawn, a trained phlebotomist will collect 2-3 mL of blood in an EDTA tube. If using an FTA card, a drop of blood from a finger prick will be applied to the card and allowed to dry.

Step 3

Report Delivery

There are no activity restrictions after sample collection. The specimen is transported to the DNA Labs India laboratory for DNA extraction, enrichment, NGS sequencing, bioinformatics analysis, and clinical interpretation. The report will be shared within 3 to 4 weeks.

Timeline: 3 to 4 weeks from sample receipt. Complex cases with variants requiring family segregation studies may take longer.

Patient Instructions

1
Before the Test:No fasting required. The patient will be asked to provide informed consent. A genetic counsellor may take a detailed family history and draw a pedigree chart. Please bring previous clinical records, muscle biopsy reports, and CK results if available.
2
During the Test:Sample collection takes around 5 to 10 minutes. Blood is collected by a trained professional; if using FTA card, a finger-prick blood spot is placed on the card and dried.
3
After the Test:You can resume daily activities immediately. The sample is sent to the laboratory for NGS analysis. Results are expected within 3 to 4 weeks and will be shared through the preferred delivery method.

About This Test

Who Should Get This Test

The purpose of this NGS genetic test is to identify disease-causing variants in the POMT1 gene, confirm a diagnosis of autosomal recessive limb-girdle muscular dystrophy type 2K, and support medical management and reproductive decision-making. The test is intended for use in individuals with clinical features suggestive of LGMD2K, a family history of the condition, or after abnormal creatine kinase levels and muscle weakness have been noted.

How to Prepare

  • Blood sample: Collect in EDTA vacutainer
  • FTA card sample: Apply one drop of blood onto the marked circle and air dry for at least 30 minutes
  • All samples must be labelled clearly with patient name and unique ID
  • Provide the referral form and clinical history signed by the referring physician
  • Informed consent is mandatory for genetic testing

Doctor's Notes

Reviewed by — MBBS, MD (Medical Genetics) · Reg. No. 8532

"For families with LGMD2K, molecular confirmation is essential for reproductive counselling and prenatal options."

Last medically reviewed: September 7, 2026

Test Parameters & Specifications

Sample TypeBlood or Extracted DNA or One drop Blood on FTA Card
Sample Volume2-3 mL whole blood; 1 FTA card blood spot; or 3-5 μg extracted DNA
ContainerEDTA vacutainer (blood), sterile microtube (extracted DNA), FTA card (dried blood spot)
Collection MethodPeripheral venipuncture or blood spot on FTA card

Sample Stability

Blood in EDTA: stable for 7 days at 2-8°C
Extracted DNA: stable for 6 months at -20°C
FTA card blood spot: stable for 12 months at room temperature
Sample Rejection Criteria:
  • Clotted or haemolysed blood sample
  • Insufficient blood volume or inadequate FTA spots
  • Mislabelled specimen or missing patient ID
  • Sample without informed consent or clinical history
  • Sample received in a leaking or damaged container

Understanding Your Results

The clinical report will classify detected variants in the POMT1 gene according to ACMG-AMP guidelines. Interpretation is provided together with the patient's clinical presentation, family history, and relevant biochemical findings.
📊

No pathogenic/likely pathogenic variant detected

No disease-causing POMT1 variant identified. Other genes or non-coding variants may be responsible; further testing should be considered if clinical suspicion remains high.

📊

One pathogenic/likely pathogenic variant detected

The individual is a carrier for POMT1-related LGMD2K. Since LGMD2K is autosomal recessive, two variants are required for disease. Variant segregation testing in family members is recommended.

📊

Two pathogenic/likely pathogenic variants detected

Molecular diagnosis of POMT1-related limb-girdle muscular dystrophy type 2K is confirmed. Genetic counselling is recommended for family members and reproductive planning.

📊

Variant of uncertain significance detected

A genetic variant was found, but its clinical significance is unclear. Additional variant segregation and functional studies may be required to clarify its role.

⚠️ When to Consult a Doctor:

Consult a neurologist or clinical geneticist if you or a family member have unexplained proximal muscle weakness, raised creatine kinase, muscle cramps, or a known family history of limb-girdle muscular dystrophy. Genetic counselling should be sought before and after testing.

Limitations

  • This targeted test may not detect deep intronic variants, large structural rearrangements, or complex duplications/deletions involving POMT1.
  • A negative result does not exclude the possibility of muscular dystrophy caused by variants in other genes.
  • Variants of uncertain significance may require additional family segregation studies.
  • Results should always be interpreted in the context of clinical findings and muscle biopsy/CK data where available.

Risks & Considerations

  • Physical risk is very low; venipuncture may cause minor pain, bruising, or rarely infection
  • Genetic test results may cause psychological stress or anxiety
  • Results may reveal carrier status in family members and have reproductive implications
  • There is a small risk of discovery of incidental findings unrelated to the primary reason for testing

Interfering Factors

  • Severely degraded or low-quality DNA
  • Insufficient blood volume or FTA card sample
  • PCR inhibitors or contamination
  • Failure to provide clinical history and consent
  • Somatic mosaicism or rare genetic variants not detectable by this NGS approach

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Frequently Asked Questions

What is the POMT1 gene limb-girdle muscular dystrophy type 2K?
POMT1-related LGMD type 2K is an autosomal recessive form of limb-girdle muscular dystrophy caused by mutations in the POMT1 gene. It affects muscle strength and structure, presenting with proximal muscle weakness and variable severity.
How is LGMD type 2K inherited?
It is inherited in an autosomal recessive pattern. A child needs two altered copies of POMT1, one from each parent, to develop the condition. Parents are usually unaffected carriers.
What are the common symptoms?
Common symptoms include weakness in shoulder and pelvic girdle muscles, difficulty walking or running, muscle cramps, stiffness, myalgia and loss of muscle mass. Onset can vary from childhood to adulthood.
What is the cost of this NGS genetic test?
The price is Rs 20000.0 (INR 20,000). The test includes NGS analysis of the POMT1 gene and clinical reporting. Home sample collection is available at no extra cost for online bookings in many Indian cities.
What sample is needed for the POMT1 NGS test?
The test can be performed using 2-3 mL whole blood in an EDTA tube, an FTA card blood spot, or extracted DNA. The exact sample type should be confirmed when booking the test.
Do I need to fast before the test?
No, fasting is not required for this genetic test. You can eat and drink normally before sample collection.
How long will the reports take?
Reports are generally available within 3 to 4 weeks after the sample reaches the laboratory. The exact time depends on sequencing completion and variant analysis.
Why does DNA Labs India provide raw data files?
Raw data files, FASTQ and VCF are shared along with the clinical report to maintain transparency and allow specialists to reanalyse variant data if needed. DNA Labs India provides these files for better patient-centred precision medicine.
Is genetic counselling required before the test?
Genetic counselling is strongly recommended. The pretest session helps draw a family pedigree, explain the autosomal recessive inheritance, and obtain informed consent. A post-test session helps interpret results and discuss reproductive options.
What does an NGS genetic test do?
NGS determines the sequence of the coding regions of the POMT1 gene and identifies disease-causing variants. This supports a definite diagnosis of LGMD type 2K when two pathogenic variants in trans are identified.
Can this test be used for carrier testing in family members?
Once familial mutations are identified, targeted testing can be offered to at-risk family members. The NGS test itself may identify carrier status; however, post-test genetic counselling is important before any family member is tested.
Is the POMT1 NGS test covered under insurance or government schemes?
Coverage depends on the insurer and scheme. At present, the test is not directly listed under PMJAY/CGHS/ECHS/ESIC and may need to be self-funded or covered as a special case. A formal prescription from a neurologist or geneticist will help with reimbursement claims.
Worried about the process? Our certified phlebotomists collect thousands of samples every month across India. The process takes under 5 minutes and is virtually painless. Questions? Message us on WhatsApp — we're here 7 days a week.

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