Rice Genome Sequencing-30X Test
Short Name: Rice Genome Seq 30X
Also known as: Rice Whole Genome Sequencing, Rice WGS 30X
Rice Genome Sequencing-30X Test test available at DNA Labs India for ₹38,000. Uses Next-Generation Sequencing (NGS), Whole Genome Sequencing on Extracted DNA samples. Results in Reports are delivered within 5 weeks from the date of sample receipt.. Free home collection in 300+ cities across India.
🩺 Medically Reviewed By
Dr Pasupathy Arumugam
Consultant Pathologist · Reg: 21521
Last reviewed: September 7, 2026
Overview
The primary purpose of Rice Genome Sequencing-30X is to provide a complete genetic blueprint of a rice plant. This information is used to identify genetic mutations, structural variations, and single nucleotide polymorphisms (SNPs) that correlate with desirable traits such as high yield, disease resistance, drought tolerance, and grain quality. By understanding the genetic basis of these traits, breeders can select superior parent lines for crossing, accelerate the breeding cycle through marker-assisted selection, and develop rice varieties that are better suited to specific environmental conditions. Additionally, this sequencing service aids in the diagnosis of genetic disorders in rice that may manifest as poor growth, low productivity, or increased susceptibility to pests and diseases. For researchers, the genomic data serves as a foundation for functional genomics studies, enabling the discovery of novel genes and pathways that control important agronomic characteristics. Ultimately, the purpose is to empower stakeholders in the rice value chain with precise genetic information to enhance food security and agricultural sustainability.
- Test Code
- 6365
- CPT Code
- 81479
- ICD Code
- Z13.9
- Price
- ₹38,000
- Sample Type
- Extracted DNA
- Result Time
- Reports are delivered within 5 weeks from the date of sample receipt.
- Fasting Required
- No
- Method
- Next-Generation Sequencing (NGS), Whole Genome Sequencing
Sample Collection
Ensure the rice sample is fresh and free from contaminants. If sending extracted DNA, ensure it is stored at -20°C and shipped on dry ice.
Method: Home collection or walk-in
Laboratory Analysis
Collect leaf tissue or seeds as per instructions. Use sterile tools to avoid contamination. Place sample in a labeled, DNAase-free tube.
Report Delivery
Store the sample at -20°C if not shipped immediately. Ship the sample to the lab within 24 hours on dry ice.
Timeline: Reports are delivered within 5 weeks from the date of sample receipt.
Patient Instructions
About This Test
Who Should Get This Test
The primary purpose of Rice Genome Sequencing-30X is to provide a complete genetic blueprint of a rice plant. This information is used to identify genetic mutations, structural variations, and single nucleotide polymorphisms (SNPs) that correlate with desirable traits such as high yield, disease resistance, drought tolerance, and grain quality. By understanding the genetic basis of these traits, breeders can select superior parent lines for crossing, accelerate the breeding cycle through marker-assisted selection, and develop rice varieties that are better suited to specific environmental conditions. Additionally, this sequencing service aids in the diagnosis of genetic disorders in rice that may manifest as poor growth, low productivity, or increased susceptibility to pests and diseases. For researchers, the genomic data serves as a foundation for functional genomics studies, enabling the discovery of novel genes and pathways that control important agronomic characteristics. Ultimately, the purpose is to empower stakeholders in the rice value chain with precise genetic information to enhance food security and agricultural sustainability.
How to Prepare
- Collect young, healthy leaf tissue (2-3 cm) or seeds
- Place in a sterile tube with silica gel or DNA stabilization buffer
- Label the tube with sample ID and date
- Ship to DNA Labs India within 24 hours
Doctor's Notes
Reviewed by Dr Pasupathy Arumugam — MBBS, MD (Pathology) · Reg. No. 21521
"Rice genome sequencing at 30X coverage provides a comprehensive view of the plant's genetic architecture, enabling precise identification of variants associated with agronomic traits. This service is invaluable for breeding programs aiming to enhance yield and stress tolerance."
Last medically reviewed: September 7, 2026
Test Parameters & Specifications
Sample Stability
- Sample without proper labeling
- Sample with visible contamination or mold
- Insufficient DNA quantity (<0.5 µg)
- Sample shipped without cold chain
Understanding Your Results
Presence of known resistance genes (e.g., Pi genes)
Indicates potential resistance to specific diseases
Recommendation: Utilize in breeding programs for disease resistance
SNPs associated with grain size or yield
May influence productivity
Recommendation: Consider for marker-assisted selection
Structural variants in stress-responsive genes
Could affect tolerance to abiotic stress
Recommendation: Evaluate under stress conditions
No significant variants
Genetic makeup is typical; trait issues may be environmental
Recommendation: Review cultivation practices
Consult a geneticist or agricultural scientist if the sequencing results reveal significant variants that require expert interpretation for breeding decisions or if you need guidance on implementing genomic data in your crop improvement program.
Limitations
- ⚠Sequencing may not detect very large structural rearrangements
- ⚠Bioinformatics interpretation may miss variants in repetitive regions
- ⚠Results are for research and breeding purposes, not for human diagnostics
- ⚠Requires high-quality DNA for optimal results
Risks & Considerations
- ●No physical risks as the test is performed on plant samples
- ●Potential for inconclusive results if sample quality is poor
Interfering Factors
- ●Poor quality or degraded DNA sample
- ●Contamination with other plant or microbial DNA
- ●Insufficient DNA quantity
- ●Improper storage or transport of sample
Compare With Similar Tests
| Test | Rice Genome Sequencing-30X | Rice Genome Sequencing-15X | Rice Exome Sequencing | Rice Genotyping by Sequencing (GBS) |
|---|---|---|---|---|
| Comparison | Rice Genome Sequencing-30X |
Frequently Asked Questions
What is Rice Genome Sequencing-30X?
Why is 30X coverage important?
What type of sample is required?
How long does it take to get results?
Can this test help improve rice yield?
Is home sample collection available?
What is the cost of the test?
Who should consider this test?
Are there any risks involved?
What kind of report will I receive?
Can this test detect diseases in rice?
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