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SLC25A19 Gene Microcephaly, Amish type NGS Genetic Test

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SLC25A19 Gene Microcephaly, Amish type NGS Genetic Test

Short Name: SLC25A19 NGS Test

Also known as: SLC25A19 Gene Sequencing, Amish Microcephaly Genetic Test

SLC25A19 Gene Microcephaly, Amish type NGS Genetic Test test available at DNA Labs India for ₹20,000. Uses Next Generation Sequencing (NGS) on Blood or Extracted DNA or One drop Blood on FTA Card samples. Results in Reports are typically available within 3 to 4 weeks after the sample is received at the laboratory.. Free home collection in 300+ cities across India.

NGS Genetic Test🏠 Home Collection

🩺 Medically Reviewed By

Overview

The purpose of this NGS genetic test is to identify pathogenic mutations in the SLC25A19 gene that cause microcephaly, Amish type. This test aids in confirming a clinical diagnosis, providing prognostic information, guiding management decisions, and enabling carrier testing and prenatal diagnosis for at-risk family members.

Test Code
5851
CPT Code
81407
ICD Code
Q02
Price
₹20,000
Sample Type
Blood or Extracted DNA or One drop Blood on FTA Card
Result Time
Reports are typically available within 3 to 4 weeks after the sample is received at the laboratory.
Fasting Required
No
Method
Next Generation Sequencing (NGS)
Step 1

Sample Collection

No special preparation is required. However, a clinical history of the patient and a genetic counseling session to draw a pedigree chart of family members affected with SLC25A19 Gene Microcephaly, Amish type is recommended before the test.

Method: Venipuncture or FTA card spot

Step 2

Laboratory Analysis

Blood sample is collected by a trained phlebotomist using standard venipuncture technique. For FTA card, a few drops of blood are placed on the card and allowed to dry.

Step 3

Report Delivery

No specific precautions are needed. The sample is transported to the laboratory at ambient temperature.

Timeline: Reports are typically available within 3 to 4 weeks after the sample is received at the laboratory.

Patient Instructions

1
Before the Test:A genetic counseling session is recommended to discuss the purpose, risks, and benefits of the test. A pedigree chart will be drawn to assess inheritance patterns.
2
During the Test:The test involves a simple blood draw or FTA card sample collection. No anesthesia or special procedures are required.
3
After the Test:After the test, you will receive the report in 3-4 weeks. A genetic counselor will explain the results and their implications for you and your family.

About This Test

Who Should Get This Test

The purpose of this NGS genetic test is to identify pathogenic mutations in the SLC25A19 gene that cause microcephaly, Amish type. This test aids in confirming a clinical diagnosis, providing prognostic information, guiding management decisions, and enabling carrier testing and prenatal diagnosis for at-risk family members.

How to Prepare

  • Ensure the patient's identity is verified.
  • Use EDTA vacutainer for blood collection.
  • If using FTA card, apply blood spots and let dry completely.
  • Label the sample with patient details and date of collection.
  • Transport the sample to the lab within 24-48 hours.

Doctor's Notes

Reviewed by — MBBS, MD (Pathology) · Reg. No. 21521

"Early genetic diagnosis of SLC25A19-related microcephaly is crucial for management and family counseling. This NGS test provides definitive answers."

Last medically reviewed: September 7, 2026

Test Parameters & Specifications

Sample TypeBlood or Extracted DNA or One drop Blood on FTA Card
Sample Volume2-3 ml blood or 1 FTA card spot
ContainerEDTA vacutainer or FTA card
Collection MethodVenipuncture or FTA card spot

Sample Stability

Blood (EDTA): 7 days at 2-8°C, 24 hours at ambient temperature
Extracted DNA: 1 year at -20°C
FTA card: Stable for months at ambient temperature
Sample Rejection Criteria:
  • Hemolyzed or clotted blood sample
  • Insufficient sample volume
  • Improper labeling
  • Sample received after prolonged delay without proper storage

Understanding Your Results

The interpretation of the SLC25A19 gene NGS test is based on the detection of sequence variants and their classification according to ACMG guidelines. The report will indicate whether a pathogenic variant is present and the zygosity status.
📊

Pathogenic variant detected (homozygous or compound heterozygous)

Confirms diagnosis of SLC25A19-related microcephaly (Amish type). Autosomal recessive inheritance.

📊

Pathogenic variant detected (heterozygous)

Carrier status; individual is unaffected but at risk of having affected offspring if partner is also a carrier.

📊

No pathogenic variant detected

SLC25A19 gene mutation is unlikely to be the cause; other genetic or environmental causes should be considered.

📊

Variant of uncertain significance (VUS)

Further testing or family studies may be needed to determine clinical significance.

⚠️ When to Consult a Doctor:

Consult a clinical geneticist or neurologist if the test result is positive or if you have concerns about microcephaly in yourself or your child. Genetic counseling is recommended for all patients undergoing this test.

Limitations

  • This test detects mutations in the SLC25A19 gene only; other genetic causes of microcephaly are not evaluated.
  • Variant of uncertain significance (VUS) may be reported; further studies may be needed.
  • This test does not detect all possible mutations (e.g., deep intronic variants, large rearrangements) unless specifically validated.
  • Results should be interpreted in the context of clinical findings and family history.

Risks & Considerations

  • Minimal risk of bruising or infection at the blood draw site
  • Psychological impact of receiving genetic results
  • Potential for uncertain results (VUS)

Interfering Factors

  • Contamination of sample with foreign DNA
  • Poor DNA quality or quantity
  • Incomplete clinical information may affect interpretation
  • Presence of large deletions/duplications not detected by standard NGS (unless CNV analysis included)

Compare With Similar Tests

TestSLC25A19 Gene Microcephaly, Amish type NGS Genetic TestChromosomal Microarray (CMA)Microcephaly Gene PanelWhole Exome Sequencing (WES)
ComparisonSLC25A19 Gene Microcephaly, Amish type NGS Genetic TestCMA detects copy number variations (deletions/duplications) across the genome, while this NGS test focuses on sequence variants in the SLC25A19 gene. CMA may miss point mutations.A panel test includes multiple genes associated with microcephaly, whereas this test is single-gene. Panel may be more comprehensive but costlier.WES analyzes all coding regions of the genome, providing broader coverage but at a higher cost and with more complex interpretation.

Frequently Asked Questions

What is the SLC25A19 gene and its role in microcephaly?
The SLC25A19 gene provides instructions for a mitochondrial thiamine pyrophosphate transporter. Mutations disrupt energy production, leading to impaired brain development and microcephaly, particularly in the Amish population.
What are the symptoms of SLC25A19 gene microcephaly?
Symptoms include a significantly smaller head size, developmental delays, intellectual disability, seizures, vision and hearing problems, abnormal muscle tone, and difficulties with movement and coordination.
How is SLC25A19 gene microcephaly diagnosed?
Diagnosis involves clinical evaluation, imaging (MRI/CT), and genetic testing. This NGS test specifically identifies mutations in the SLC25A19 gene.
What is the cost of the SLC25A19 NGS genetic test at DNA Labs India?
The test costs INR 20,000, which includes DNA extraction, sequencing, and analysis. Home sample collection is free for online bookings.
What sample is required for this test?
The sample can be blood (EDTA), extracted DNA, or one drop of blood on an FTA card.
How long does it take to get the results?
Results are typically available within 3 to 4 weeks after the sample is received.
Is fasting required before the test?
No, fasting is not required for this genetic test.
Who should consider this test?
Individuals with microcephaly, developmental delay, or a family history of SLC25A19-related microcephaly, especially those of Amish descent or with consanguinity.
What does a positive test result mean?
A positive result indicates the presence of a pathogenic mutation in the SLC25A19 gene, confirming the diagnosis of Amish type microcephaly.
Can this test be done during pregnancy?
Yes, prenatal testing is possible using appropriate samples (e.g., amniotic fluid or chorionic villus) after genetic counseling.
Are there any risks associated with the test?
The test is safe with minimal risks, such as slight bruising at the blood draw site. Genetic results may have psychological implications.
Is genetic counseling included?
Yes, a genetic counseling session is part of the pre-test process to draw a pedigree and discuss implications.
Worried about the process? Our certified phlebotomists collect thousands of samples every month across India. The process takes under 5 minutes and is virtually painless. Questions? Message us on WhatsApp — we're here 7 days a week.

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