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SYNGAP1 Gene Mental retardation, autosomal dominant type 5 NGS Genetic Test

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SYNGAP1 Gene Mental retardation, autosomal dominant type 5 NGS Genetic Test

Short Name: SYNGAP1 NGS Test

Also known as: SYNGAP1 gene sequencing, Autosomal dominant mental retardation type 5 genetic test, SYNGAP1-related intellectual disability NGS panel

SYNGAP1 Gene Mental retardation, autosomal dominant type 5 NGS Genetic Test test available at DNA Labs India for ₹20,000. Uses Next-Generation Sequencing on Blood / Extracted DNA / FTA Card Blood samples. Results in Reports are usually available within 3 to 4 weeks after the sample is received at the laboratory.. Free home collection in 300+ cities across India.

NGS Genetic Test🏠 Home Collection

🩺 Medically Reviewed By

Overview

The purpose of this NGS genetic test is to detect pathogenic variants in the SYNGAP1 gene that cause autosomal dominant type 5 intellectual disability. It helps confirm a clinical diagnosis, guide medical management, and provide recurrence risk information for families.

Test Code
4244
Price
₹20,000
Sample Type
Blood / Extracted DNA / FTA Card Blood
Result Time
Reports are usually available within 3 to 4 weeks after the sample is received at the laboratory.
Fasting Required
No
Method
Next-Generation Sequencing
Step 1

Sample Collection

No fasting or special preparation is required. Please carry any previous medical records, imaging, or genetic testing reports for the pre-test counseling session.

Method: Blood draw or DNA submission or FTA card spot

Step 2

Laboratory Analysis

A small blood sample is collected by a trained phlebotomist. For FTA cards, one drop of blood is applied to the card and allowed to air dry.

Step 3

Report Delivery

No post-collection restrictions. You can resume your normal daily activities immediately.

Timeline: Reports are usually available within 3 to 4 weeks after the sample is received at the laboratory.

Patient Instructions

1
Before the Test:No fasting is needed. A doctor's referral and a pre-test genetic counselling session are recommended. Bring clinical notes, imaging, or previous genetic test reports if available.
2
During the Test:A blood sample is collected from a vein in the arm. If an FTA card is being used, a single drop of blood is collected and placed on the card.
3
After the Test:You may resume routine activities. The result will be shared within 3 to 4 weeks along with raw data files, FASTQ, and VCF files.

About This Test

Who Should Get This Test

The purpose of this NGS genetic test is to detect pathogenic variants in the SYNGAP1 gene that cause autosomal dominant type 5 intellectual disability. It helps confirm a clinical diagnosis, guide medical management, and provide recurrence risk information for families.

How to Prepare

  • For blood: collect in an EDTA vacutainer and maintain at ambient temperature.
  • For FTA card: apply one drop of blood to the card and allow it to air dry completely.
  • For extracted DNA: deliver in a sterile, labelled tube with the required concentration.
  • All samples must be labelled with the patient's name, UHID, and date of collection.

Doctor's Notes

Reviewed by — MBBS, MD (General Medicine) · Reg. No. 8052

"In families with unexplained intellectual disability, a molecular diagnosis helps provide accurate recurrence risk counselling for future pregnancies. A clinical genetics review is essential before and after testing."

Last medically reviewed: September 7, 2026

Test Parameters & Specifications

Sample TypeBlood / Extracted DNA / FTA Card Blood
Sample VolumeAs per laboratory protocol
ContainerEDTA tube / FTA card / sterile labelled tube
Collection MethodBlood draw or DNA submission or FTA card spot

Sample Stability

EDTA blood: 24-48 hours at room temperature (2-30°C).
FTA card: stable for weeks at room temperature.
Extracted DNA: stable at -20°C if longer storage is required.
Sample Rejection Criteria:
  • Incorrectly labelled sample
  • Haemolysed or clotted blood if insufficient
  • Sample received in improper transport medium
  • Samples older than recommended transport time

Understanding Your Results

The test report should be interpreted in the context of the patient's clinical presentation, family history, and other laboratory findings. A clinical geneticist should review the result before final diagnosis.
Positive / Pathogenic variant: Supports a molecular diagnosis of SYNGAP1-related intellectual disability.
Negative result: No pathogenic variant detected in SYNGAP1; does not rule out other genetic causes.
Variant of uncertain significance (VUS): Additional segregation testing in family members may be required.
⚠️ When to Consult a Doctor:

Consult your physician or clinical geneticist if you or your child has developmental delay, intellectual disability, seizures, or behavioural concerns. Genetic testing should only be ordered after proper clinical evaluation and pre-test counseling.

Limitations

  • NGS may not detect all types of variants, such as deep intronic variants or large structural rearrangements, depending on the assay design.
  • A negative result does not exclude a genetic cause of intellectual disability.
  • Variants of uncertain significance may require additional family studies before a definitive conclusion can be made.

Risks & Considerations

  • Minor bleeding or bruising at the venipuncture site
  • Uncomfortable sensation during needle insertion
  • Anxiety related to the genetic testing process or results

Interfering Factors

  • Very low-quality or degraded DNA samples
  • Insufficient sample quantity
  • Contamination with another individual's DNA
  • Rare deep intronic variants not covered by standard NGS analysis

Compare With Similar Tests

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Frequently Asked Questions

What is SYNGAP1 gene?
SYNGAP1 provides instructions for a protein that regulates synaptic Ras GTPase signaling, important for learning and memory. Pathogenic variants in SYNGAP1 cause autosomal dominant type 5 intellectual disability.
What is the cost of the SYNGAP1 NGS genetic test in India?
The test costs Rs 20000.0 at DNA Labs India. This includes NGS analysis and is available at a special discounted price.
What sample is required for the test?
Blood, extracted DNA, or one drop of blood on an FTA card can be used. Fasting is not required before sample collection.
Do I need to fast before sample collection?
No fasting is required. This is a genetic test and is not affected by food intake.
How long will the report take?
Reports are usually available within 3 to 4 weeks after the sample reaches the laboratory.
Will I receive raw data files?
Yes, DNA Labs India provides raw data, FASTQ, and VCF files along with the clinical report for maximum transparency.
Why is genetic counselling recommended before the test?
A genetic counselling session helps draw the family pedigree, explain the benefits and limitations of testing, and obtain informed consent.
Who should undergo this test?
Children and adults with intellectual disability, global developmental delay, epilepsy, or behavioural features suggestive of a SYNGAP1-related disorder.
What does a positive or negative result mean?
Positive indicates a pathogenic SYNGAP1 variant is present. Negative means no pathogenic variant was detected in SYNGAP1, but it does not completely exclude a genetic cause.
Is home sample collection available?
Yes, free home sample collection is provided for online bookings across many cities in India. You can confirm availability while booking.
Can this test detect all genetic causes of intellectual disability?
No, this test is specific to the SYNGAP1 gene. Other genes and chromosomal abnormalities may also cause intellectual disability and may require different testing.
Are there any risks from this genetic test?
The main risk is minor bleeding or bruising during blood collection. Genetic testing has no post-test physical restrictions.
Worried about the process? Our certified phlebotomists collect thousands of samples every month across India. The process takes under 5 minutes and is virtually painless. Questions? Message us on WhatsApp — we're here 7 days a week.

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Reference Laboratory Services

We serve as a reference laboratory for hospitals and clinics across India. Send samples from your facility with same-day pickup, priority processing, and results delivered through our online portal. Competitive institutional pricing available.

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Your Data Privacy

Your medical data is protected under Indian law.

Stored in India: All patient records are stored on servers located in India. No data is transferred outside the country.

DPDP Act Compliant: Under the Digital Personal Data Protection Act 2023, you can request deletion of your records at any time by contacting support.

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