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SPTLC1 Gene HSAN1 NGS Genetic Test

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SPTLC1 Gene HSAN1 NGS Genetic Test

Short Name: SPTLC1 HSAN1 NGS Genetic Test

Also known as: SPTLC1 HSAN1 NGS Test, HSAN1 Genetic Test, Hereditary Sensory Neuropathy Type 1 DNA Test

SPTLC1 Gene HSAN1 NGS Genetic Test test available at DNA Labs India for ₹20,000. Uses Next Generation Sequencing (NGS) on Blood or Extracted DNA or One drop Blood on FTA Card samples. Results in 3 to 4 weeks after the sample reaches the laboratory.. Free home collection in 300+ cities across India.

Neurology / Genetic DisorderAll ages; symptoms often begin in adolescence🏠 Home Collection

🩺 Medically Reviewed By

Overview

To identify mutations in the SPTLC1 gene associated with HSAN1, allowing accurate diagnosis, differentiated management, and genetic counseling.

Test Code
4124
CPT Code
N/A
ICD Code
G60.8
Price
₹20,000
Sample Type
Blood or Extracted DNA or One drop Blood on FTA Card
Result Time
3 to 4 weeks after the sample reaches the laboratory.
Fasting Required
No
Method
Next Generation Sequencing (NGS)
Step 1

Sample Collection

No fasting is required. A genetic counseling session is recommended before testing to draw a pedigree chart of family members affected with SPTLC1 Gene HSAN1 disease and to review the clinical history.

Method: Peripheral venipuncture or finger-prick FTA card spot

Step 2

Laboratory Analysis

A small amount of blood is drawn from the arm, or one drop of blood is placed on an FTA card. The procedure is quick and minimally invasive.

Step 3

Report Delivery

No post-test restriction is required. You may continue normal activities immediately.

Timeline: 3 to 4 weeks after the sample reaches the laboratory.

Patient Instructions

1
Before the Test:Before the test, a genetic counseling session is recommended to draw a family pedigree and discuss inherited risk. No fasting is required.
2
During the Test:A blood sample or FTA card spot is collected for DNA extraction and next-generation sequencing.
3
After the Test:Results will be shared with you in 3 to 4 weeks. Genetic counseling after the report is strongly advised.

About This Test

Who Should Get This Test

To identify mutations in the SPTLC1 gene associated with HSAN1, allowing accurate diagnosis, differentiated management, and genetic counseling.

How to Prepare

  • Submit EDTA whole blood in an EDTA vacutainer.
  • Alternatively, provide extracted DNA in a sterile DNA vial.
  • Use an FTA card with one drop of blood for simple transport.
  • Label all samples clearly with patient name, date of birth, and collection date.

Doctor's Notes

Reviewed by — MBBS, MD (Medical Genetics) · Reg. No. 8532

"A positive SPTLC1 result should always be reviewed with the patient's clinical history and neurological examination. Pre- and post-test genetic counseling helps patients understand inheritance, risks to relatives, and available management options."

Last medically reviewed: September 7, 2026

Test Parameters & Specifications

Sample TypeBlood or Extracted DNA or One drop Blood on FTA Card
Sample VolumeNot specified; as per laboratory requirement
ContainerEDTA vacutainer, sterile DNA vial, or FTA paper card
Collection MethodPeripheral venipuncture or finger-prick FTA card spot

Sample Stability

Whole blood at 2–8°C: 72 hours
Extracted DNA at -20°C: 6 months
FTA Card at room temperature: stable for weeks
Sample Rejection Criteria:
  • Hemolyzed or lipemic blood samples
  • Clotted blood samples in EDTA
  • Unlabeled or mislabeled samples
  • Samples stored at room temperature for more than 72 hours

Understanding Your Results

Interpretation of the SPTLC1 gene result should be performed by a qualified clinical geneticist. The report includes variant classification and clinical significance, integrated with the patient's clinical presentation.
No pathogenic variant detected: Does not exclude HSAN1 if clinical suspicion is strong; other genes or variants may be involved.
Pathogenic variant detected: Confirms the genetic diagnosis and provides important information for family counselling.
Variant of uncertain significance (VUS): The variant cannot be definitively classified at this time; further studies or segregation analysis may be recommended.
⚠️ When to Consult a Doctor:

Consult a neurologist or genetic counselor if you have progressive numbness, pain, weakness, recurrent foot ulcers, or a family history of HSAN1. Seek medical advice before and after genetic testing to understand the clinical implications.

Limitations

  • NGS detects single-nucleotide variants and small insertions/deletions but may not reliably detect large structural rearrangements or trinucleotide repeat expansions.
  • A negative result does not rule out HSAN1 caused by mutations in other genes.
  • Variants of uncertain significance may require additional family segregation studies or functional evidence.
  • This test is designed for diagnostic confirmation; prenatal testing requires additional consent, validation, and genetic counseling.

Risks & Considerations

  • Minimal risk from blood draw
  • Possible bruising or pain at the collection site
  • Rare vasovagal episode or faintness during blood collection

Interfering Factors

  • Recent allogeneic bone marrow transplant or blood transfusion
  • Sample contamination during collection or processing
  • Highly degraded or fragmented DNA
  • Incorrect sample labeling or mismatch

Compare With Similar Tests

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Frequently Asked Questions

What is the SPTLC1 Gene HSAN1 NGS Genetic Test?
It is a next-generation sequencing test that analyzes the SPTLC1 gene for mutations associated with Hereditary Sensory Autonomic Neuropathy Type 1 (HSAN1). It helps confirm the genetic cause of peripheral neuropathy symptoms.
Who should consider this test?
Individuals with sensory loss, pain, burning sensations, weakness in limbs, foot ulcers, or a family history of HSAN1. It is also used to identify at-risk family members after a positive result in an affected relative.
What sample is needed?
Blood, extracted DNA, or one drop of blood on an FTA card can be used.
Is fasting required?
No, fasting is not required for this genetic test.
How long does it take to get the report?
Reports are generally available in 3 to 4 weeks.
What does the test cost at DNA Labs India?
The cost is INR 20,000, which includes free home sample collection for online bookings in many cities across India.
What is the accuracy of NGS for HSAN1?
NGS has high analytical sensitivity for single-nucleotide variants and small insertions/deletions in the covered regions of the SPTLC1 gene, but no genetic test can rule out every possible variant.
Does the result rule out HSAN1 if no mutation is found?
A negative result reduces but does not completely rule out HSAN1, because the condition may be caused by variants in other genes, large deletions, or regulatory regions not detected by this test.
Will I receive raw data files?
Yes. You should ask for Raw Data, FASTQ, and VCF files. DNA Labs India provides these transparently along with the conclusive clinical report.
Is home sample collection available?
Yes, DNA Labs India offers free home sample collection for online bookings in multiple cities across India.
Is genetic counseling recommended?
Yes, genetic counseling is strongly recommended before and after testing to review family history, draw a pedigree, and interpret results appropriately.
Can this test be used for prenatal diagnosis?
This test is designed for diagnostic confirmation of HSAN1. Prenatal testing requires additional consent, validation, and discussion with a genetic counselor.
Worried about the process? Our certified phlebotomists collect thousands of samples every month across India. The process takes under 5 minutes and is virtually painless. Questions? Message us on WhatsApp — we're here 7 days a week.

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Your medical data is protected under Indian law.

Stored in India: All patient records are stored on servers located in India. No data is transferred outside the country.

DPDP Act Compliant: Under the Digital Personal Data Protection Act 2023, you can request deletion of your records at any time by contacting support.

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