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WHRN Gene Deafness, autosomal recessive type 31 NGS Genetic Test

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WHRN Gene Deafness, autosomal recessive type 31 NGS Genetic Test

Short Name: WHRN Gene DFNB31 NGS Test

Also known as: DFNB31 Genetic Test, Deafness Type 31 NGS Test, WHRN-Related Hearing Loss Test, Whirlin Gene Mutation Test, Autosomal Recessive Deafness 31 Genetic Test

WHRN Gene Deafness, autosomal recessive type 31 NGS Genetic Test test available at DNA Labs India for ₹20,000. Uses Next-Generation Sequencing (NGS), Sanger Sequencing Confirmation, Bioinformatics Analysis, ACMG Variant Classification Guidelines on Blood or Extracted DNA or One Drop Blood on FTA Card samples. Results in Results are typically available within 3 to 4 weeks from the date of sample receipt at the laboratory. Reports are delivered via online portal, email, and WhatsApp.. Free home collection in 300+ cities across India.

NGS Genetic TestAll Ages🏠 Home Collection

🩺 Medically Reviewed By

Overview

The purpose of the WHRN Gene Deafness Type 31 NGS Genetic Test is to identify pathogenic or likely pathogenic mutations in the WHRN gene that cause autosomal recessive non-syndromic sensorineural hearing loss (DFNB31). This test enables definitive molecular diagnosis, guides clinical management including cochlear implant evaluation, facilitates carrier detection in family members, informs genetic counseling regarding recurrence risks, supports family planning decisions, and helps identify candidates for emerging gene-based therapeutic approaches.

Test Code
2338
CPT Code
81479
ICD Code
H90.3
Price
₹20,000
Sample Type
Blood or Extracted DNA or One Drop Blood on FTA Card
Result Time
Results are typically available within 3 to 4 weeks from the date of sample receipt at the laboratory. Reports are delivered via online portal, email, and WhatsApp.
Fasting Required
No
Method
Next-Generation Sequencing (NGS), Sanger Sequencing Confirmation, Bioinformatics Analysis, ACMG Variant Classification Guidelines
Step 1

Sample Collection

A genetic counseling session is recommended before testing to discuss clinical history, family pedigree, test implications, and possible outcomes. Provide detailed clinical history of the patient and affected family members. No fasting or special preparation is required for this test. Bring any previous audiological reports or imaging studies for reference.

Method: Venipuncture or FTA Card Spot

Step 2

Laboratory Analysis

A trained phlebotomist will collect approximately 3-5 mL of venous blood using standard venipuncture technique into an EDTA vacutainer tube. Alternatively, one drop of blood can be placed on an FTA card. The collection procedure typically takes less than 10 minutes. The sample is labeled, sealed, and transported under controlled ambient temperature conditions to the laboratory.

Step 3

Report Delivery

After sample collection, patients can resume normal daily activities immediately. Mild bruising or soreness at the puncture site may occur and typically resolves within 1-2 days. Results will be available in 3 to 4 weeks and can be accessed via the online portal, email, or WhatsApp. A follow-up genetic counseling session is strongly recommended to interpret and discuss the results.

Timeline: Results are typically available within 3 to 4 weeks from the date of sample receipt at the laboratory. Reports are delivered via online portal, email, and WhatsApp.

Patient Instructions

1
Before the Test:A genetic counseling session is recommended before testing to discuss the clinical history, family pedigree, test implications, potential outcomes, and psychological preparation. Provide detailed clinical and family history of the patient. No fasting or special dietary restrictions are required for this test. Bring any previous audiological evaluation reports, CT or MRI imaging of the temporal bone, and records of prior genetic testing if available.
2
During the Test:A blood sample (approximately 3-5 mL) will be collected via venipuncture using a standard EDTA vacutainer tube, or one drop of blood can be placed on an FTA card. The collection procedure is quick, typically taking less than 10 minutes, and involves minimal discomfort. The sample is processed in our NABL-accredited laboratory using next-generation sequencing technology to analyze the WHRN gene.
3
After the Test:After sample collection, you can resume normal daily activities immediately. Mild soreness or minor bruising at the venipuncture site may occur and resolves within 1-2 days. Results will be available within 3 to 4 weeks. A comprehensive clinical report along with raw data files (FASTQ and VCF) will be provided. A follow-up genetic counseling session is strongly recommended to understand and discuss the results and their implications.

About This Test

Who Should Get This Test

The purpose of the WHRN Gene Deafness Type 31 NGS Genetic Test is to identify pathogenic or likely pathogenic mutations in the WHRN gene that cause autosomal recessive non-syndromic sensorineural hearing loss (DFNB31). This test enables definitive molecular diagnosis, guides clinical management including cochlear implant evaluation, facilitates carrier detection in family members, informs genetic counseling regarding recurrence risks, supports family planning decisions, and helps identify candidates for emerging gene-based therapeutic approaches.

How to Prepare

  • A trained phlebotomist will collect the blood sample at your home or at our designated collection center.
  • For FTA card collection, only one drop of capillary or venous blood is required on the designated area.
  • Ensure the sample is properly labeled with patient full name, date of birth, and unique identification number.
  • The sample will be transported under appropriate temperature-controlled conditions to our NABL-accredited laboratory.
  • If collected at home, the phlebotomist will handle all logistics including packaging and transport of the sample.

Doctor's Notes

Reviewed by — MBBS, MD (Medical Genetics) · Reg. No. 8532

"Patients presenting with progressive bilateral sensorineural hearing loss, particularly those with a family history consistent with autosomal recessive inheritance, should be evaluated for WHRN gene mutations. The NGS genetic test provides a definitive molecular diagnosis that is critical for clinical management, prognostic counseling, informed family planning decisions, and early intervention strategies such as cochlear implantation when appropriate. Genetic counseling both before and after testing is strongly recommended to help patients and families understand the implications of results, recurrence risks, and available support resources."

Last medically reviewed: September 7, 2026

Test Parameters & Specifications

Sample TypeBlood or Extracted DNA or One Drop Blood on FTA Card
Sample Volume3-5 mL whole blood
ContainerEDTA (Lavender Top) Vacutainer or FTA Card
Collection MethodVenipuncture or FTA Card Spot

Sample Stability

Whole blood in EDTA: Stable at room temperature (15-25°C) for up to 24 hours
Whole blood in EDTA: Stable at 2-8°C for up to 7 days
FTA Card with blood spot: Stable at room temperature for up to 6 months
Extracted DNA: Stable at -20°C for long-term storage up to 5 years
Sample Rejection Criteria:
  • Hemolyzed samples with visible red cell lysis
  • Insufficient sample volume for DNA extraction
  • Improperly labeled or unlabeled samples
  • Samples received in leaking or damaged containers
  • Samples collected more than 7 days ago without proper refrigeration
  • Contaminated samples or samples collected in wrong anticoagulant tubes

Understanding Your Results

The results of the WHRN Gene Deafness Type 31 NGS Genetic Test are interpreted based on the presence, type, and classification of variants detected in the WHRN gene. All variants are classified according to ACMG guidelines. A positive result indicates the identification of pathogenic or likely pathogenic variants in the WHRN gene, confirming the molecular diagnosis of DFNB31. A negative result means no pathogenic variants were detected in the WHRN gene, though the possibility of mutations in other deafness-associated genes is not excluded. Variants of uncertain significance (VUS) require further evaluation, family segregation analysis, and clinical correlation.
📊

Pathogenic or Likely Pathogenic Variant Detected (Homozygous)

Confirms diagnosis of WHRN-related autosomal recessive deafness type 31. Both alleles carry causative mutations. Genetic counseling and appropriate audiological management are recommended.

📊

Pathogenic or Likely Pathogenic Variant Detected (Compound Heterozygous)

Two different pathogenic variants identified on separate alleles, consistent with DFNB31. Confirmation of parental carrier status is recommended.

📊

Single Heterozygous Pathogenic Variant Detected

The individual is a carrier of one pathogenic WHRN mutation. They are typically unaffected but can pass the variant to offspring. Partner testing and genetic counseling are recommended.

📊

Variant of Uncertain Significance (VUS) Detected

A genetic variant was identified but current evidence is insufficient to determine its clinical significance. Family segregation studies, functional analysis, and periodic reclassification may be needed.

📊

No Pathogenic Variants Detected

No causative mutations were identified in the WHRN gene. This result does not fully exclude a genetic etiology for hearing loss. Testing of additional deafness-associated genes may be considered.

⚠️ When to Consult a Doctor:

Consult a clinical geneticist or audiologist if you or your child experiences progressive bilateral hearing loss, difficulty understanding speech, frequent need to increase volume on devices, ringing in the ears, or if there is a family history of hereditary hearing loss. Early consultation is especially important for children with suspected genetic deafness to ensure timely intervention such as hearing aids or cochlear implants, which can significantly improve speech and language development outcomes.

Limitations

  • This test targets the WHRN gene only and does not screen for mutations in other deafness-associated genes
  • Large genomic rearrangements or copy number variations may not be fully detected by NGS alone
  • Variants of uncertain significance (VUS) may be identified and may require further investigation
  • Deep intronic mutations and regulatory region variants outside the targeted regions may not be detected
  • A negative result does not completely exclude a genetic cause of hearing loss involving other genes

Risks & Considerations

  • Minimal physical risk from blood draw including minor bruising, soreness, or very rare infection at the puncture site
  • Psychological and emotional impact of receiving genetic test results, especially unexpected findings
  • Possibility of identifying variants of uncertain significance (VUS) that may cause anxiety without providing definitive answers
  • Potential implications for insurance, employment, or family dynamics based on genetic information
  • Risk of incidental findings in linked genes (though targeted analysis minimizes this)

Interfering Factors

  • Degraded DNA due to improper sample storage or transport
  • Hemolyzed blood samples may affect DNA extraction quality
  • Recent blood transfusion within the past 4 weeks may affect results
  • Bone marrow transplant recipients may have donor DNA present

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ComparisonWHRN Gene Deafness, autosomal recessive type 31 NGS Genetic Test

Frequently Asked Questions

What is WHRN Gene Deafness, autosomal recessive type 31 (DFNB31)?
WHRN Gene Deafness, also known as autosomal recessive deafness type 31 or DFNB31, is a genetic form of sensorineural hearing loss caused by mutations in the WHRN (whirlin) gene. This gene encodes a protein essential for the proper development and function of hair cells in the inner ear. Mutations lead to progressive bilateral hearing loss that can range from moderate to profound severity, typically presenting in early childhood.
What are the common symptoms of WHRN gene deafness?
Common symptoms include progressive bilateral hearing loss, difficulty hearing high-pitched sounds, trouble understanding speech especially in noisy environments, frequent need to increase volume on electronic devices, ringing in the ears (tinnitus), and in some cases, dizziness or balance problems. The severity and progression can vary significantly between individuals.
How is the NGS Genetic Test for WHRN gene deafness performed?
The test uses Next-Generation Sequencing (NGS) technology to analyze the complete coding region of the WHRN gene from a patient's DNA. DNA is extracted from the blood sample, amplified, and sequenced using advanced platforms. All detected variants are interpreted and classified according to ACMG guidelines. The test includes quality assurance measures such as Sanger sequencing confirmation of clinically significant variants.
What sample is required for the WHRN gene NGS Genetic Test?
The test requires either a blood sample (3-5 mL collected in an EDTA lavender-top vacutainer tube), extracted DNA from a previous sample, or one drop of blood on an FTA (Flinders Technology Associates) card. Blood collection is performed by a trained phlebotomist via standard venipuncture procedure.
How much does the WHRN Gene Deafness NGS Genetic Test cost in India?
The WHRN Gene Deafness, autosomal recessive type 31 NGS Genetic Test costs Rs 20,000 at DNA Labs India. This price includes sample collection, NGS sequencing and analysis, variant interpretation, a comprehensive clinical report, raw data files (FASTQ and VCF), and a genetic counseling session. Free home sample collection is available for online bookings across India.
How long does it take to get the test results?
Results for the WHRN Gene Deafness NGS Genetic Test are typically available within 3 to 4 weeks from the date of sample receipt at our laboratory. The report, along with raw data files (FASTQ and VCF), will be shared via the online portal, email, and WhatsApp for your convenience.
Is the NGS Genetic Test for WHRN gene deafness accurate?
Yes, the NGS Genetic Test offered by DNA Labs India uses state-of-the-art sequencing technology with high sensitivity and specificity for detecting mutations in the WHRN gene. Our laboratory follows stringent quality control protocols and is NABL-accredited and ISO-certified. Clinically significant variants are confirmed using Sanger sequencing to ensure accuracy. The analytical sensitivity for single nucleotide variants and small indels is greater than 99%.
Can this test identify carriers of the WHRN gene mutation?
Yes, the test can identify individuals who carry a single heterozygous pathogenic variant in the WHRN gene. Carriers are typically unaffected but can pass the mutation to their offspring. If both parents are carriers, there is a 25% chance with each pregnancy that the child will inherit both mutated copies and be affected by DFNB31. Carrier testing is especially recommended for family planning purposes.
Is genetic counseling recommended before and after this test?
Yes, genetic counseling is strongly recommended both before and after the WHRN Gene Deafness NGS Genetic Test. Pre-test counseling helps you understand the test purpose, implications, possible outcomes, and limitations. Post-test counseling helps you interpret the results, understand recurrence risks for family members, discuss treatment options such as cochlear implants or hearing aids, and make informed decisions about family planning.
What treatment options are available after a diagnosis of WHRN gene deafness?
While there is currently no cure for WHRN gene deafness at the genetic level, several effective management options are available. These include hearing aids for moderate hearing loss, cochlear implants for severe to profound hearing loss, speech and language therapy, auditory-verbal therapy, and educational support. Early intervention, especially in children, significantly improves speech and language development outcomes. Emerging gene therapy research may offer future therapeutic possibilities.
Is home sample collection available for the WHRN Gene Deafness NGS Genetic Test?
Yes, DNA Labs India offers complimentary home sample collection for the WHRN Gene Deafness NGS Genetic Test for online bookings across India. A trained phlebotomist will visit your home at a scheduled time to collect the blood sample. This service is available in over 300 cities including Mumbai, Delhi, Bangalore, Hyderabad, Chennai, Kolkata, Pune, Ahmedabad, and many more.
What files and reports are provided with the test results?
DNA Labs India is committed to transparency and provides a comprehensive package with every WHRN Gene Deafness NGS Genetic Test. This includes a detailed clinical test report with variant interpretations, raw sequencing data in FASTQ format, variant call data in VCF (Variant Call Format) file, and a summary of findings. DNA Labs India is the only lab in India that transparently shares raw data files alongside the clinical report, empowering patients and their physicians with complete information.
Worried about the process? Our certified phlebotomists collect thousands of samples every month across India. The process takes under 5 minutes and is virtually painless. Questions? Message us on WhatsApp — we're here 7 days a week.

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